mlawrenz/DoVCD
Extract energies, free energies, and theoretical spectroscopic properties from Gaussian log files.
Averages over snapshots of alpha spheres detected by MOE or another program. Outputs VMD dx file.
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Extract energies, free energies, and theoretical spectroscopic properties from Gaussian log files.
Program for running end point free energy calculations on protein-ligand complexes using AMBER and its associated MMPBSA.py program. Requires only a protein and ligand structure as input.
Public repository.
Extensible software for building Markov State Models for Biomolecular Conformational Dynamics