mattions/pysamstats
A Python utility for calculating statistics against genome positions based on sequence alignments from a SAM or BAM file.
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A Python utility for calculating statistics against genome positions based on sequence alignments from a SAM or BAM file.
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
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