luisico/itrajcomp
interactive Trajectory Comparison
Tokeninput is a jQuery plugin which allows your users to select multiple items from a predefined list, using autocompletion as they type to find each item. You may have seen a similar type of text entry when filling in the recipients field sending messages on facebook.
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interactive Trajectory Comparison
VMD plugin for rmsd calculation and fitting of molecular structures
VMD plugin to swap coordinates between atoms in a molecule
VMD plugin to calculate and visualize clusters of conformations for a trajectory