lianos/TagSeq-original
Analysis of tag based high-throughput sequencing protocols
Extensions to Bioconductor GenomicFeatures package. Primarily, this implements a more "Gene Centric" view on the world, as opposed to base GenomicFeature's transcript/exon/cds centric view.
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Analysis of tag based high-throughput sequencing protocols
Extensions to Gviz
Eases some of the pain when using Sublime Text 2 to code in R
Pedagogical machine learning exercises for NGS data