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Catalog / ksahlin / genomics_tools
Public GitHub Catalog Discovered Oct 2, 2026

ksahlin / genomics_tools

Misc scripts for information processing of genomes, reads, variants, etc..

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#23917525GitHub System ID
ksahlinOrganization / User
PublicVisibility
ActiveCatalog Status

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Benchmarks a range of different sv callers using snakemake for the workflow

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ksahlin/eval_kmer_choice

Evaluates the best k-mer choice from programs choosing an optimal k in De Bruijn graphs

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ksahlin/optimal_k

Calculates optimal k for a DBG assembler given one or more read libraries

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