ksahlin/eval_Gap2Seq
Evaluation pipeline for Gap2Seq written in snakemake
Estimating distance of unknown sequence in genomic assemblies using paired read libraries (e.g. PE, MP)
Public repository record indexed from GitHub. Explore verified star velocity metrics, source code repositories, and curated developer tool directories across the GitHubRepo ecosystem.
Evaluation pipeline for Gap2Seq written in snakemake
Benchmarks a range of different sv callers using snakemake for the workflow
Evaluates the best k-mer choice from programs choosing an optimal k in De Bruijn graphs
Calculates optimal k for a DBG assembler given one or more read libraries