kiwiroy/ensembl
The Ensembl Core Perl API and SQL schema
Interactive, hackable graphic design application
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The Ensembl Core Perl API and SQL schema
An easily extensible DBI shell, perfect for a drop-in replacement to mysql-client
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link below) for usage instructions. Also, there is a page on the wiki describing how the 1000 genomes CEU trio was carried out with the files and parameters used for the various steps.