kgori/bpp
Estimate pairwise sequence distances by maximum likelihood
Counting gene duplications
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Estimate pairwise sequence distances by maximum likelihood
Python wrapper for the phylogenetic likelihood library (PLL), from the Exelixis lab. Of RAxML fame.
Sate-Enabled Phylogenetic Placement (SEPP)
A Python library for phylogenetic scripting, simulation, data processing and manipulation.