Where a model is specified in SBML, there is a key deficiency in tools for solving models dependent on interventions. ASPASIA addresses this problem, allowing interventions to be applied once a steady state has been reached, and can provide SBML models for sensitivity analysis of that intervention.
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To both ease and encourage wider adoption of ASPASIA, we have also provided an online ASPASIA settings file generator. This generator is run within a web browser, and gathers the information required to produce the settings file, before creating and offering the file for download.
R package for the analysis of simulation results generated from iDynomics
PHP Scripts that make up the online iDynoMiCS protocol file generator
Version of PPSim created using the York simulation database - generated during postdoctoral work at York in 2012