justinashworth/pymol_scripts
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A c++ implementation of correlation distance-based hierarchical clustering (relying on fastcluster) that also performs efficient bootstrapping on larger datasets that is far faster than R's standard pvclust package. (This involves using a modified pvclust, see pvclust_mod respository)
mod of pvclust R package for major efficiency/speed improvements on large datasets
fastcluster (http://danifold.net/fastcluster.html) with some added functions for moar fast