josephryan/exoblast
compare genome assemblies using sequence similarity to transcript or protein sequences from a different species.
Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)
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compare genome assemblies using sequence similarity to transcript or protein sequences from a different species.
identify potential non-animal transcripts in animal transcriptomes
an algorithm to look for convergent signals in phylogenetic trees
Perl extensions for dealing with molecular sequence data formats (FASTA, FASTQ, GFF3, and more)