jooolia/ggvegan
ggplot-based plots for vegan
Tutorial on using R to run cytoscape visualizations
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ggplot-based plots for vegan
Software Carpentry web site.
R scripts for performing co-occurrence analyses
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page: