jmarshall/server
A reference implementation of the APIs defined in the schemas repository.
collection of data structures and algorithms
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A reference implementation of the APIs defined in the schemas repository.
A Java API for high-throughput sequencing data (HTS) formats.
Public repository.
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.