jhhung/SLAM-Seq-Aligner
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A highly hardware-acceleration friendly k-ordered FM-index for exact string matching, overlap graph construction for de novo assembly, and more.
An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
Tailor is a fast short read aligner like bowtie/BWA/SOAP2 but is designed specifically to discovering trimming and tailing events for small silencing RNAs.