jgmeyerucsd/ProteomeDigestSim
A collection of R classes to allow prediction of proteome coverage based on digestion, specifically iterative digestion by MED-FASP
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Discovered Sep 27, 2026
jgmeyerucsd / PyCryptsy
Python binding to the Cryptsy API
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jgmeyerucsd/PepsuM
a package in [R] for MS-based proteomics data quality control and summary. So far, the package uses two main classes, "proteome" and "pepsum" for containing and working on the proteome sequences and the database search output, respectively. Most of the functions for class pepsum objects are focused on summarizing output from either MS-GFDB or Protein Prospector, but some flexibility exists and eventually I hope the code will be more flexible.