hyphaltip/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
UCR Biocluster job scripts
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a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
Public repository.
test planets
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript to identify putative long non-coding RNAs among your transcripts.