Find the locations of TEs using the TSD in unassembled short reads by comparing to a closely related reference genome assembly
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Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript to identify putative long non-coding RNAs among your transcripts.
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Official git repository for Biopython (converted from CVS)
Public repository.