galosh/profillic
A suite of programs for estimating parameters of Profile HMMs using Baum-Welch, Conditional Baum-Welch, and both Unconditional and Conditional Quadratic Ascent.
A suite of programs for working with Profile HMMs.
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A suite of programs for estimating parameters of Profile HMMs using Baum-Welch, Conditional Baum-Welch, and both Unconditional and Conditional Quadratic Ascent.
Modified versions of HMMER 3 programs to implement interoperability with galosh profiles (as generated by profillic).
A library of useful C++ classes for working with genomic sequence data and Profile HMMs.