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Use a Raspberry Pi as a data acquisition platform. Will use pySerial to communicate with various instruments plugged in on usb or using custom boards that plug into the i/o pins. A web front end to control everything would be nice too.
Demo application for the 'Jenkins: The Definitive Guide' book
BareBones OS for the Raspberry Pi
C++Implementation of the KDTree nearest neighbour algorithm as described at http://en.wikipedia.org/wiki/Kdtree