dmyersturnbull/pipe-dream
Fast, distributed next-next-generation DNA sequencing pipeline written in Scala and built on ADAM and Docker. Generates phased calls from reads.
A framework built on Java 8 streams for applying transformations to files and streams.
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Fast, distributed next-next-generation DNA sequencing pipeline written in Scala and built on ADAM and Docker. Generates phased calls from reads.
Micro-libraries for reading and writing genomic sequence data in various formats.
Physical Underpinnings of Biological Systems 2015, group E. Poss - PyND
Simple Java code for sequence alignment and scoring, built on top of biojava-alignment.