coreyflynn / GeneExpressMap

GeneExpressMap makes possible the rapid, three-dimensional analysis of multiplex fluorescent whole mount in situ hybridizartion (F-WMISH) data at single cell resolution. It relies on the assignment of F-WMISH signal to individual cells based on the proximity of cytoplasmic hybridization signal to cell nuclei. GeneExpress3D greatly extends the power of multiplex F-WMISH for analyzing patterns of gene expression and is a powerful tool for gene regulatory network analysis.