cbouyio/analysesCode
Various analysis code (mostly statistics with R) as well as shell scripts for specfic tasks.
A set of python modules for (mostly) typical everyday jobs initially developed at TSL
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Various analysis code (mostly statistics with R) as well as shell scripts for specfic tasks.
A computational framework to simulate various staeps in sequencing enrichment and mining of NGS reads for sequences of interest. A set of pure python modules are representing the various precedures, a run script is provided to conduct the experiments and a control parameters file to set the experimental parameters. We intent to use the framewrok as a tool for the general plant (and not only) community to enchance the studies of sequence enrichment approaches.
Set of modules for working with htgs reads and related software, maq, Bowtie etc
Various perl modules developed at TSL