biocyberman/piper
A genomics pipeline build on top of the GATK Queue framework
Chanjo provides a better way to handle sequence coverage data in clinical sequencing.
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A genomics pipeline build on top of the GATK Queue framework
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.github.io/hts-specs) format.
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
An attempt to create one-stop documentation for Broad Institute's GATK and Queue tools. This aims to produce one final file in HTML or PDF to view offline, online or even printing if needed..