benedictpaten/cPecan
C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program.
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Discovered Sep 25, 2026
benedictpaten / matchingAndOrdering
Library of matching and ordering algorithms, used for "reference problem"
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More from benedictpaten
benedictpaten/marginAlign
UCSC Nanopore
benedictpaten/RefVariationTaskTeam
Work on data models and APIs for graph structures that represent the human reference genome plus common human genetic variants. Includes mapping to a reference genome, and standardization of the mechanism for referring to variants.
benedictpaten/pinchesAndCacti
Library for constructing pinch graphs and cactus graphs