benedictpaten/cPecan
C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program.
Python based pipeline management software for clusters (but checkout toil: https://github.com/BD2KGenomics/toil, its successor)
This repository is cataloged as part of our automated global GitHub synchronization. Full telemetry, velocity snapshots, and code summaries are scheduled for continuous enrichment.
C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program.
UCSC Nanopore
Work on data models and APIs for graph structures that represent the human reference genome plus common human genetic variants. Includes mapping to a reference genome, and standardization of the mechanism for referring to variants.
Library for constructing pinch graphs and cactus graphs