ahmetz/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
Create beautilful oncoprints in R
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Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.
All graphs in “Creating More Effective Graphs”, made with R package ggplot2.
code for dPCR primer design based on delly fusions