# abrahamdsl/map_variance_in_new_to_orig_genome

> This is a program to map variances that were retrieved on a created, mostly similar genome, to the   origin/base genome. Takes in variances (SNPs and INDELs only for now) in VCF format, gets its nearby X sequences   to the left and right and these are BLAST-ed into the original genome.      Best hit is selcted and the sequence is reduced again to  to infer the location in   new genome.

- **Canonical URL**: https://githubrepo.cloud/repo/abrahamdsl/map_variance_in_new_to_orig_genome
- **GitHub Repository**: https://github.com/abrahamdsl/map_variance_in_new_to_orig_genome
- **Maintainer / Creator**: https://github.com/abrahamdsl
- **Discovered On**: Oct 2, 2026

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