SHird/PRGmatic
A bioinformatics pipeline for calling genotypes from genome-enriched next-generation sequencing data. More info: Hird SM, Brumfield RT and BC Carstens. 2010. PRGmatic: an efficient pipeline for collating genome-enriched second generation sequencing data using a “provisional-reference genome”. Molecular Ecology Resources. [DOI: 10.1111/j.1755-0998.2011.03005.x]