PeteHaitch/repete
Miscellaneous R functions that I find useful.
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Discovered Sep 27, 2026
PeteHaitch / Correct-Bismark-SAM-BAM-FLAGs
A Python script to "correct" the FLAGs in a SAM/BAM generated by Bismark to comply with the SAM specifications. Specifically, correct the strand information in the FLAG and add a custom tag XS:Z:<value> to encode which DNA-strand the read is informative for, where <value> = OT, CTOT, OB or CTOB.
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More from PeteHaitch
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