yangjl/mccortex
Cortex on steroids: for larger populations with better assembly
Developer Profile
yangjl
Discovered public repositories for yangjl in the GitHub catalog.
yangjl/Misc
Public repository.
yangjl/moon_phase
Public repository.
yangjl/bayesR
Bayesian hierarchical model for complex trait analysis
yangjl/MeetingTweets
codes and archieved tweets
yangjl/SAM_RD
Using read depth for Genomic selection
yangjl/N2
Repo for the N2 fixation project
yangjl/angsdwrapper-poster
Public repository.
yangjl/genome
Python library and scripts for retrieval and storage of genomics data in HDF5 format
yangjl/Demo
RNA-seq pipeline for UCD farm job submission
yangjl/lab-docs
The Ross-Ibarra's lab documentation
yangjl/gitignore
A collection of useful .gitignore templates
yangjl/angsd-wrapper
Wrapper scripts and documentation to make angsd more usable
yangjl/ProgenyArray
An R package to work with half-sib progeny array data
yangjl/reviews
Writing reviews of academic papers
yangjl/pvpDiallel
Deleterious alleles project
yangjl/jcvi
Python utility libraries on genome assembly, annotation and comparative genomics
yangjl/genomicspapers
The Leek group guide to genomics papers
yangjl/MS
ms related
yangjl/knitr
A general-purpose tool for dynamic report generation in R
yangjl/bmapathway
MATLAB source code to accompany the PLoS Genetics paper, "Integrated enrichment analysis of variants and pathways in genome-wide association studies indicates central role for IL-2 signaling genes in type 1 diabetes, and cytokine signaling genes in Crohn's disease".
yangjl/genomics-tools
Tools for Google Genomics API
yangjl/markdown-here
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
yangjl/tapioca
Tapioca is a pipeline for Illumina Casava 1.8 genome analyzer/hiseq data.
yangjl/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
yangjl/BayesDataAnalysisWithPyMC
Python (PyMC) adaptation of the R code from "Doing Bayesian Data Analysis"
yangjl/bioinformatics
Tools for bioinformatics
yangjl/cgat
CGAT - Computational Genomics Analysis Tools
yangjl/en
Public repository.
yangjl/cn
My Blog in Chinese
yangjl/yangjl.github.com
Home Page
yangjl/zmSNPtools
A collection of codes designed to process a range of basic, large-scale analyses for SNPs of maize diversity panel.
yangjl/bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
yangjl/SNPcalling
A SNP and short Indel calling pipeline.
yangjl/slidify
Generate reproducible html5 slides from R markdown