wuzhigang05/adaptor_trimmer
A command line tool to remove adaptors from both next generation sequencing and Sanger sequencing reads
Discovered public repositories for wuzhigang05 in the GitHub catalog.
A command line tool to remove adaptors from both next generation sequencing and Sanger sequencing reads
benchmark of Samtools/Bcftools, GATK and VariantTools
Area-weighted venn-diagrams for Python/matplotlib
Painlessly create beautiful matplotlib plots.
Statistical data visualization using matplotlib
a python notebook help in understanding seqtk and bwa by Heng Li
automatic creation of a scala project
contains my dot files for git, vim and bashrc etc
Lectures on scientific computing with python, as IPython notebooks.
This repo contains some ipython notebooks that used in various project
Config files for vim and tmux.
Public repository.
Companion scalding project referenced in my blog post.
sample maven commands to create a default Scala project
Additional code relevant to creating a scala distribution.
This is a barebones Node.js app using the Express framework.
Example Scala environment repository, under which you can easily switch between terminal and Eclipse. See build.sbt for how to use a third party library.
DNA sequence/reads simulator.
Java implementation of quadratic space for aligning three sequences
Align three sequence using Quadratic space
Implementation of Hirschberg's algorithm; linear space implementation of dynamic programming
python implementation of suffix tree, which yields a data structure that can allow substring querying finished in O(n), where n is the length of query string.
a flexible FASTA/Q reader with lots of options