wtsi-hgi/flask
A microframework based on Werkzeug, Jinja2 and good intentions (unofficial fork)
Developer Profile
wtsi-hgi
Discovered public repositories for wtsi-hgi in the GitHub catalog.
wtsi-hgi/werkzeug
A flexible WSGI implementation and toolkit (unofficial fork)
wtsi-hgi/flask-restful
Simple framework for creating REST APIs (unofficial fork)
wtsi-hgi/docker-proxify
Allows building and running docker container images from behind a corporate proxy
wtsi-hgi/redsocks
transparent redirector of any TCP connection to proxy (unofficial copy)
wtsi-hgi/docker-ubuntu-python-pip
Trusted docker build based on ubuntu with addition of Python and pip
wtsi-hgi/irods
Middleware for your critical data.
wtsi-hgi/rt-integration
Fetches tickets from RT (using REST API) and sends them to webhook
wtsi-hgi/serf
Service orchestration and management tool.
wtsi-hgi/hgi-project
HGI Project tracking database
wtsi-hgi/dockerfile-arangodb
Public repository.
wtsi-hgi/mercury
Overarching repository for work on Mercury.
wtsi-hgi/tabula
Project logging and analysis in the console.
wtsi-hgi/profiles
contributed profiles
wtsi-hgi/gatk-protected
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
wtsi-hgi/gatk
GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses
wtsi-hgi/DNG_dev
HGI's current version of DenovoGear, not the official release. A program to detect denovo-variants using next-generation sequencing data. (http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html)
wtsi-hgi/bcftools
Human Genetics Informatics repository for bcftools (not official release)
wtsi-hgi/r-travis
Tools for using R with Travis (http://travis-ci.org)
wtsi-hgi/petardfs
PetardFS - a FUSE filessytem for injecting intentional errors (e.g. for testing)
wtsi-hgi/lustre_operator
Wrapper script to allow non-root users to run privileged lfs commands on particular Lustre filesystems (using sudo)
wtsi-hgi/bhaps
converters from text-based haplotype matrix to binary haplotype matrix, and for sampling haplotypes into genotypes
wtsi-hgi/hapi-ur
HAPI-UR: HAPlotype Inference for UnRelated samples (cloned from: https://code.google.com/p/hapi-ur)
wtsi-hgi/vr-pipe
Generic pipeline system
wtsi-hgi/graph
Graph package providing various implementations of graph data structures and graph processing algorithms.
wtsi-hgi/wings
WINGS Workflow System
wtsi-hgi/shadowbroker
Quick tool to connect the HGI queues on RT to the MUC
wtsi-hgi/DNAOrderApp
Refining the process for ordering DNA Sequences
wtsi-hgi/cvmfs-test
A test framework for the CernVM-FS
wtsi-hgi/hgi-web_apitoken
Issue API access tokens to otherwise authenticated clients
wtsi-hgi/hgi-web_usermod
User roles authentication module for HGI-web
wtsi-hgi/rendr
Render your Backbone.js apps on the client and the server, using Node.js.
wtsi-hgi/hgc-tools
Set of tools for working with Mercury capsules.
wtsi-hgi/mod-proxy-add-user
a tiny apache module to pass REMOTE_USER via headers to proxy servers
wtsi-hgi/hgi-web
Public repository.
wtsi-hgi/hattie
Control panel for HGI Users to Request work be done
wtsi-hgi/hgc-deploy
Tools for creating and running Mercury containers. (now deprecated in favour of hgc-tools)
wtsi-hgi/bridgebuilder
BridgeBuilder efficiently remaps BAM/SAM reads to a new reference by first building a "bridge" reference, first mapping to that bridge, and then remapping only a subset of reads to the full new reference.
wtsi-hgi/translate_header
Public repository.
wtsi-hgi/replace_reads
Replaces reads in a BAM file
wtsi-hgi/cvmfs
The CernVM File System
wtsi-hgi/hts-specs
SAM/BAM specification
wtsi-hgi/serapis-web
Public repository.
wtsi-hgi/seq_autoqc
Additional high-throughput sequencing autoQC steps
wtsi-hgi/IYG
Inside Your Genome Project
wtsi-hgi/www-hierarchical-fairshare
Tools to view LSF hierarchical fairshare UserGroup shares and current priority (e.g. in a treemap)
wtsi-hgi/bloch
BLOCH project
wtsi-hgi/IYG-SOT-Web-Lib
Inside Your Genome Trait and SNP description Crowdsourcing Site Perl Modules
wtsi-hgi/IYG-SOT-Web
SNP and Trait description crowdsourcing site for the Inside Your Genome project.
wtsi-hgi/IYG-Import
Python Data Importer for IYG Web