vsbuffalo/bam-issorted
Public repository.
Developer Profile
vsbuffalo
Discovered public repositories for vsbuffalo in the GitHub catalog.
vsbuffalo/ms-ld
Example LD simulation with recombination using ms and libsequence.
vsbuffalo/hapcount
Public repository.
vsbuffalo/ms
A version of Hudon's MS that compiles on Mavericks
vsbuffalo/hmmr
HMM algorithms in R
vsbuffalo/dotfiles_archived
My dotfiles, with simple install script.
vsbuffalo/qseq2fq
Simple C++ qseq to FASTQ converter
vsbuffalo/devnotes
Vince Buffalo's devnotes — ½ TIL, ½ notebook
vsbuffalo/zmays_germinate
Download and create local Zea mays resouces
vsbuffalo/zm_unique
Public repository.
vsbuffalo/dwgeval
Tools to evaluate DWGSIM alignments
vsbuffalo/bamslider
Sliding windows in BAM/SAM files with Python's deques
vsbuffalo/popgen-notes
Population genetics notes
vsbuffalo/wgsim
Reads simulator
vsbuffalo/maf
An (experimental) mapping assessment framework
vsbuffalo/pgmath-explore
The mathematics of some good population genetics papers explored (a bit as a refresher)
vsbuffalo/bds-files
Supplementary files for my book, "Bioinformatics Data Skills"
vsbuffalo/good-news-everyone
Good news everyone! You can have Futurama in your shell again.
vsbuffalo/makefiles-in-bioinfo
A talk on Makesfiles in bioinformatics
vsbuffalo/bioman
Public repository.
vsbuffalo/readfq
Fast multi-line FASTA/Q reader in several programming languages
vsbuffalo/quality-tutorial
A tutorial on how to use sequence quality improvement and assessment tools
vsbuffalo/seqqs
seqqs is a C program/library for gathering quality statistics from sequencing data
vsbuffalo/bwa
Burrow-Wheeler Aligner
vsbuffalo/klib
A standalone and lightweight C library
vsbuffalo/boot-camps
Software Carpentry boot camp material
vsbuffalo/bioawk-tutorial
Public repository.
vsbuffalo/seqtk
Public repository.
vsbuffalo/bioawk
BWK awk modified for biological data
vsbuffalo/applied_git_sciences_talk
Public repository.
vsbuffalo/homebrew-science
Scientific formulae for the Homebrew package manager
vsbuffalo/readphaser
experimental read phasing from HapCut
vsbuffalo/pyfermi
Experimental Python interface to the fermi assembler
vsbuffalo/samtools
Public repository.
vsbuffalo/codonstats
Public repository.
vsbuffalo/ssbf
streaming sequence bloom filter
vsbuffalo/BioRanges
A small library for ranges/intervals, for use with genomic data.
vsbuffalo/blast2cap3
A tool for merging transcriptome assemblies via protein homology
vsbuffalo/findorf
ORF prediction of de novo transcriptome assemblies
vsbuffalo/samfilter
A tiny SAM/BAM filter
vsbuffalo/rna-seq-example
An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)
vsbuffalo/Rllvm
R interface to LLVM C++ API to be able to create compiled code from within R
vsbuffalo/RLLVMCompile
LLVM-based compiler for R code (experimental)
vsbuffalo/toy-motif-finder
Public repository.
vsbuffalo/RNASeqTools
Diagnostics for doing RNA-seq in R
vsbuffalo/rna_seq_talk
Public repository.
vsbuffalo/git-demo
A very quick demo of Git for beginners
vsbuffalo/mll_translocation
Tools and notes for finding translocations in the human MLL gene
vsbuffalo/sickle
Windowed adaptive trimming for fastq files using quality
vsbuffalo/scythe
A 3'-end adapter contaminant trimmer