vhsvhs/bedgraph2wig
Convert BED graph files into wiggle tracks (WIG). This allows genome sequencing data to be viewed as WIG files within MochiView.
Developer Profile
vhsvhs
Discovered public repositories for vhsvhs in the GitHub catalog.
vhsvhs/ArrayProbeCollapse
Collapse microarray data
vhsvhs/ArayProbeCollapse
Collapse microarray data
vhsvhs/asr-pipeline
A software pipeline for aligning sequences, inferring ML phylogenies, reconstructing ancestors, and more
vhsvhs/trna_evo
This is analysis pipeline used to make Figure 3 in [Yona, Bloom-Ackerman, et al., eLife 2013], available at this URL: [http://www.ncbi.nlm.nih.gov/pubmed/24363105]. This project analyzes the evolution of tRNAs, from across the tree of life. How prevalent is anticodon switching?
vhsvhs/phylowidgets
A collection of Python-based widgets for manipulating sequence alignments, phylogenies, and reconstructed ancestors.
vhsvhs/anccomp
Identification of functional genetic loci
vhsvhs/prob_motif
What is the probability of a cis-regulatory motif occurring by chance?
vhsvhs/simgenome
SimGenome is a quantitative model of gene transcription regulatory circuit evolution. SimGenome incorporates three major aspects of this process: (i) DNA-binding thermodynamics, (ii) non-equilibrium gene expression patterns, and (iii) population structure and evolution.