uci-cbcl/MixClone
A mixture model for inferring tumor subclonal populations
Developer Profile
uci-cbcl
Discovered public repositories for uci-cbcl in the GitHub catalog.
uci-cbcl/DeepCADD
Public repository.
uci-cbcl/genomix
Parallel genome assembly using Hyracks
uci-cbcl/consensus-search
Simple consensus search script as used in our *genesis* Xenopus paper
uci-cbcl/PyLOH
Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity
uci-cbcl/HTS-waterworks
A Ruffus pipeline for Analysis of High-Throughput Sequencing data
uci-cbcl/AREM
AREM -- Aligning Reads by Expectation-Maximization
uci-cbcl/GBMCI
The implementation of gradient boosting machine for concordance index learning.
uci-cbcl/EXTREME
An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data
uci-cbcl/TEMT
Transcripts abundances estimation from heterogeneous tissue sample of RNA-Seq data (TEMT)
uci-cbcl/tree-hmm
Tree hidden Markov model for learning epigenetic states in multiple cell types