ucdavis-bioinformatics/PBcR-testing
framework for testing various strategies related to correction of PacBio reads (via Illumina reads) and subsequent use in assembly
Developer Profile
ucdavis-bioinformatics
Discovered public repositories for ucdavis-bioinformatics in the GitHub catalog.
ucdavis-bioinformatics/assemblathon2-analysis
collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)
ucdavis-bioinformatics/sabre
A barcode demultiplexing and trimming tool for FastQ files
ucdavis-bioinformatics/qrqc
Quick Read Quality Control
ucdavis-bioinformatics/scythe
A 3'-end adapter contaminant trimmer
ucdavis-bioinformatics/sickle
Windowed Adaptive Trimming for fastq files using quality
ucdavis-bioinformatics/sam2counts
Count number of mapped reads per reference in SAM files (often for RNA-Seq experiments)
ucdavis-bioinformatics/alignerviz
A simple tool to visualize sequences using Vlachos et al's technique