ttriche/derfinder
Fast differential expression analysis of RNA-seq data at base-pair resolution
Developer Profile
ttriche
Discovered public repositories for ttriche in the GitHub catalog.
ttriche/la_dataviz
Slides for LA Dataviz presentation
ttriche/user2014.github.io
UseR 2014 Web Pages
ttriche/GenomicFileViews
Views across multiple files
ttriche/Dropout.jl
Fast dropout training (regularization via feature corruption) for GLMs for Julia
ttriche/DataFrames.jl
library for working with tabular data in Julia
ttriche/GLM.jl
Generalized linear models in Julia
ttriche/gamlr
The gamlr package for R.
ttriche/rsite
A clean, modern website for R using Bootstrap3 and Slidify
ttriche/dma
Dynamic model averaging (development repo)
ttriche/tapkee
A flexible and efficient С++ template library for dimension reduction
ttriche/rcloud
RCloud is an HTML5 frontend for collaboratively developing and sharing R scripts
ttriche/rtsne
An R package for t-SNE (t-Distributed Stochastic Neighbor Embedding)
ttriche/BCPeakR
Xing et al's BayesianChangePoint peak caller. Currently requires patching to install as an R package.
ttriche/bitstarter
Public repository.
ttriche/BiocParallel
Bioconductor facilities for parallel evaluation (experimental)
ttriche/NPBayesHMM
Nonparametric Bayesian Inference for Sequential Data. Includes state-of-the-art MCMC inference for Beta process Hidden Markov Models (BP-HMM). Implemented in Matlab.
ttriche/chRomHMM
This WAS the repository for the ChromHMM R wrapper, which is now called 'chromophobe'.
ttriche/chromophobe
a package to handle ChromHMM (http://compbio.mit.edu/ChromHMM/) and similar segmentation models in R
ttriche/regulatoR
R package to detect correlated changes across phenotypes by sparse filtered regression
ttriche/dendRix
port of Dendrix (Vandin, Upfal, & Raphael, Genome Res 2011) to R
ttriche/Paradigm
PAthway Representation and Analysis by Direct Inference on Graphical Models
ttriche/groupedPMA
new penalties for PMA (supervised/multiple CCA)
ttriche/rGammaGamma
Gamma convolutions for background correction
ttriche/rSection
port of DSection to R using cppBugs and a DP prior on k
ttriche/rStructurama
hooks Structurama into R via Rcpp