tseemann/coginator
Assign COGs to protein sequences
Developer Profile
tseemann
Discovered public repositories for tseemann in the GitHub catalog.
tseemann/tabixpp
C++ wrapper to tabix indexer
tseemann/apc
(a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
tseemann/homebrew-bioinformatics-linux
:beer: :penguin: Homebrew formulae for bioinformatics software only available for Linux
tseemann/PEAT
An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
tseemann/oases
De novo transcriptome assembler for short reads
tseemann/freebayes
Bayesian haplotype-based polymorphism discovery and genotyping.
tseemann/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
tseemann/seqtk
Toolkit for processing sequences in FASTA/Q formats
tseemann/Prodigal
Prodigal Gene Prediction Software
tseemann/nullarbor
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
tseemann/assembill
Simple script to clip, assemble, tile and annotate a bacterial genome from Illumina reads
tseemann/bng-tools
Useful post-processing scripts for BRATNextGen output data
tseemann/wombac
:bangbang: Rapid core genome SNP alignments from multiple bacterial genomes
tseemann/abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
tseemann/2013-caltech-workshop
Public repository.
tseemann/snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
tseemann/scapper
Whole genome core alignments from multiple draft genomes
tseemann/mlst
:id: Scan contig files against PubMLST typing schemes
tseemann/PEAR
Pair-End AssembeR
tseemann/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
tseemann/tseemann.github.io
Torsten Seemann's Home Page
tseemann/barrnap
:microscope: :leo: Microbial RNA annotation
tseemann/easy-web-blast
Public repository.
tseemann/sweet-fx
FastQ/FastA NGS read file tools
tseemann/vbc-tools
Collection of helper scripts for common bioinformatics tasks
tseemann/VelvetOptimiser
:chart_with_upwards_trend: Automatically optimise three of Velvet's assembly parameters.