thehyve/RInterface
An R module for interacting with tranSMART's RESTful API
Developer Profile
thehyve
Discovered public repositories for thehyve in the GitHub catalog.
thehyve/transmart-rest-api
HTTP available tranSMART RESTful API
thehyve/transmart-images
Scripts for building an deploying tranSMART VM images
thehyve/transmart-loader
tranSMART import functionality implemented in Groovy
thehyve/seleniumTests
Selenium scripts for automated tests
thehyve/transmart-mydas
Public repository.
thehyve/transmart-data
Tools for managing tranSMART's database
thehyve/mydas
mydas is an easy-to-extend Java DAS server framework.
thehyve/dazzle
Public repository.
thehyve/dbxpBase
Base domain model for dbXP / study capture framework
thehyve/jbrowse-plugin
Public repository.
thehyve/dalliance-plugin
Public repository.
thehyve/arraycgh-galaxy
ArrayCGH tools ported from Chipster to Galaxy
thehyve/tMDataLoader
new Groovy-based tranSMART ETL
thehyve/Groc-1
Beautiful documentation of your groovy sources
thehyve/openphacts-java-client
OpenPHACTS API client library for Java
thehyve/transmartApp-DB
Database schema and database dumps for tranSMART application
thehyve/transmart-core-api
Public repository.
thehyve/transmart-core-db
Implementation of transmart-core-api for PostgreSQL/Oracle/H2
thehyve/puppet-transmartApp
Puppet module to automatically install the TransmartApp
thehyve/tranSMART-ETL
tranSMART ETL pipelines and configurations
thehyve/puppet-phenotype-database
Puppet module to install Phenotype Database application suite
thehyve/transmartAppInstaller
Installation script for transmartApp and i2b2 using GAnt (Ant in Groovy)
thehyve/PathVisioRPC
PathVisioRPC is an XML-RPC implementation of PathVisio that allows users to create and edit biological pathways, visualize data on pathways, perform pathway statistics, query pathways to obtain list of participants and exports results in various image formats. Since most major programming languages have an XML-RPC implementation, this application enables users to access PathVisio functionality without leaving the programming environment with which they are familiar.
thehyve/Configuration-Files
ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool
thehyve/ISAcreator
ISAcreator is a Java desktop application which allows for creation and editing of ISATab files. Led by Eamonn Maguire and Philippe Rocca-Serra (Uni. of Oxford).
thehyve/GSCF-RClient
R client to connect to GSCF
thehyve/metabolomicsModule
Module for storing Metabolomics Data
thehyve/GDT
Grails plugin called Grails Domain Templates, which materializes an EAV datamodel in a relational database for Grails domain objects.
thehyve/Rmodules
A R statistical analysis module plugin for tranSMART
thehyve/dbxpModuleStorage
Grails Plugin for storing Metabolomics files in MongoDB
thehyve/variant
A database for storing genotype-phenotype mappings from literature. This project was commissioned by TNO Quality of Life under the EU FP7 EURRECA project.
thehyve/SAM
Simple Assay Module
thehyve/dbxpModuleBase
Grails plugin that provides basic functionality for dbXP module plugins.
thehyve/matrixImporter
Grails plugin for importing tab delimited, Excel 97/2003/2007 and CSV files
thehyve/GSCF
Generic Study Capture Framework
thehyve/transmartApp
tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work.