spond/PolEvolution
HyPhy scripts to perform multi-patient rate analyses on longitudinal pol isolates
Developer Profile
spond
Discovered public repositories for spond in the GitHub catalog.
spond/MultinomialGridMixture
Multinomial Grid Mixture model for filtering NGS errors
spond/hyphy
HyPhy: Hypothesis testing using Phylogenies
spond/FADE
A FUBAR Approach to Directional Evolution
spond/BinomialMixture
Binomial Mixture Fitting using EM with restarts
spond/pubs
Scripts and data for group publications
spond/IterOptBSREL
HyPhy batch files to iteratively optimize a BSREL model of sequence evolution
spond/SCUEAL
SCUEAL Batch Files
spond/hppy
An intuitive HyPhy interface for Python
spond/Saturation
Public repository.
spond/AAPropertyModels
Amino-acid property aware evolutionary models in HBL
spond/454_processing
454_processing
spond/IgSCUEAL
B-cell 454 processing
spond/HBL
Various HyPhy Batch Language Files
spond/gb_taxonomy_tools
GenBank taxonomy processing tools
spond/fakemp
Fake multiprocessing objects
spond/454-filter
Simple and FAST barcode splitter for 454 FASTA files.
spond/HIVClustering
Public repository.
spond/TN93
TN93 fast distance calculator