spacocha/16S_pre-processing_scripts
Scripts needed to process raw sequence data files
Developer Profile
spacocha
Discovered public repositories for spacocha in the GitHub catalog.
spacocha/lake_matlab
Public repository.
spacocha/lake_matlab_sens
Public repository.
spacocha/Distribution-based-clustering
Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) for ecological or biomedical research. This algorithm uses the information contained in the distribution of DNA sequences across samples along with sequence similarity to cluster sequences more accurately than other methods that are currently available. Developed for Illumina next-generation sequencing libraries, but applicable to any sequencing platform with sufficient number of counts per sample to infer distribution patterns.