seandavi/RNASeqBeginnerTutorial
An introduction to RNA-seq file formats, quality control, and visualization targeted to a biologist audience
Developer Profile
seandavi
Discovered public repositories for seandavi in the GitHub catalog.
seandavi/BiocBrazil2014
Code and vignettes in support of the SummerX Bioconductor course in Brazil
seandavi/SnakemakeRNASeqExample
An example RNAseq pipeline with snakemake on the NIH biowulf cluster
seandavi/PIRetreat2014ComputePoster
An informal NCI PI Retreat about the Scientific Computing Interest Group
seandavi/jheatmap
Javascript Heatmap viewer
seandavi/sshfs
File system based on the SSH File Transfer Protocol
seandavi/Illumina450kMethylationTitration
Public repository.
seandavi/Illumina27kMethylationTitration
Public repository.
seandavi/ChimpHumanBrainData
R data package containing chimp and human brain data .cel files
seandavi/ngs-analysis
Fork of https://code.google.com/p/ngs-analysis
seandavi/GEOquery
The bridge between the NCBI Gene Expression Omnibus and Bioconductor
seandavi/BiocParallel
Bioconductor facilities for parallel evaluation (experimental)
seandavi/PyVCF
A Variant Call Format reader for Python.
seandavi/ruffus
A fork of the "ruffus" pipeline program
seandavi/Helix
Tools for the NIH's Helix and Biowulf system
seandavi/COSMIC.build57
An R data package for the COSMIC database
seandavi/CCR_NGS
Tools for next-generation sequencing in use at the CCR/NCI
seandavi/d3
A JavaScript visualization library for HTML and SVG.
seandavi/emacs-for-python
Collection of emacs extensions specifically collected for python development, with workflow guidelines!
seandavi/git-wiki
A quick & dirty git-powered Sinatra wiki
seandavi/conveyor
NGS pipelines
seandavi/cruzdb
python access to UCSC genomes database
seandavi/methylumi
Public repository.
seandavi/Scribl
HTML5 canvas genomic graphics library
seandavi/pygments-code-block-directive
Definitions for a reStructuredText code-block directive using pygments, and scripts to render HTML and LaTeX.
seandavi/emacs-d
My .emacs.d directory
seandavi/GFFutils
Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach
seandavi/ngCGH
Tools for producing pseudo-cgh of next-generation sequencing data
seandavi/jbrowse
AJAX Genome Browser
seandavi/homebrew
The missing package manager for OS X.
seandavi/mysql2postgres
Mysqldump, writing in postgresql format
seandavi/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
seandavi/CompleteGenomicsTools
Software for manipulating and visualizing Complete Genomics data, with a focus on cancer
seandavi/genetrack-central
GeneTrack is a genomic data visualization software
seandavi/ngs
Next Gen Sequencing Utilities
seandavi/breakdancer
SV detection from paired end reads mapping
seandavi/rEutils
R package for accessing NCBI EUtilities