sanger-pathogens/iva
de novo virus assembler of Illumina paired reads
Developer Profile
sanger-pathogens
Discovered public repositories for sanger-pathogens in the GitHub catalog.
sanger-pathogens/assembly-stats
Get assembly statistics from FASTA and FASTQ files
sanger-pathogens/Bio-RNASeq
The new Sanger Pathogen Informatics RNA Seq analysis pipeline
sanger-pathogens/remove_blocks_from_aln
Public repository.
sanger-pathogens/Farm_blast
Python3 module to run blast+ or blastall in parallel on an LSF compute farm
sanger-pathogens/Fastaq
Python3 scripts to manipulate FASTA and FASTQ files
sanger-pathogens/Farmpy
Python3 package to handle job submission to a compute farm
sanger-pathogens/Bio-InterProScanWrapper
Public repository.
sanger-pathogens/Bio-Tradis
A set of tools to analyse the output from TraDIS analyses
sanger-pathogens/Roary
Rapid large-scale prokaryote pan genome analysis
sanger-pathogens/Bio-AutomatedAnnotation
Perl module to take in an genomic assembly and produce annoation
sanger-pathogens/Bio-VertRes-Config
Public repository.
sanger-pathogens/fastml
Addtional functionality for fastml, see http://fastml.tau.ac.il
sanger-pathogens/assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
sanger-pathogens/mlst_check
Multilocus sequence typing by blast using the schemes from PubMLST
sanger-pathogens/setup_tracking
setup a vrtracking pipeline
sanger-pathogens/snp-sites
Finds SNP sites from a multi-FASTA alignment file
sanger-pathogens/update_pipeline
Update a pipelines metadata
sanger-pathogens/pipelines_reporting
Public repository.
sanger-pathogens/vr-codebase
The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute
sanger-pathogens/Artemis
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation