samuell/Wikimate
A MediaWiki API wrapper for PHP based wikibots that [shouldn't] be confusing to use
Developer Profile
samuell
Discovered public repositories for samuell in the GitHub catalog.
samuell/ProcessWire
ProcessWire 2.3. PHP 5 based content management framework. This is the current production version.
samuell/langlangmatrix
The Language ⇔ Language Matrix, running languages in other languages
samuell/argo
RDF library written in Go
samuell/luigi_parallel_test
Public repository.
samuell/galaxy-tools-barebone
A bunch of galaxy tool configuration files, wrapping the binaries themselves, thus not depending on any python wrappers.
samuell/ffind
Fuzzy find / search for files in subfolders, on the command line
samuell/bufchan_test
Testing strange behaviour of buffered channels in Go
samuell/samuell.github.io
Website
samuell/blow
Flow-based Bioinformatics library written in Go
samuell/GeneIdConvert
MediaWiki extension to convert from Ensembl IDs to other ID types, via Ensembl REST API.
samuell/biological_id_conversion
Collection of scripts for doing ID conversions of Biological stuff like Gene IDs etc.
samuell/drmaa_python_test
Testing out the basics with DRMAA, with the python bindnings, at UPPMAX
samuell/chemicalname-to-inchi
Do Chemical name to Inchi conversion using the Chemical Translation Service
samuell/geany-colorscheme
My favourite geany color scheme
samuell/mw2html
mw2html
samuell/scripts
scripts
samuell/drawler
A web crawler written in D, to feed a MySQL database, for easy connection to Sphinx indexer.
samuell/savelinkstoxls
Simple Python script to save links from an URL into an Excel file
samuell/galaxy_semwebtools
Import data into Galaxy by using a querying an (external) SPARQL endpoint
samuell/rc
Some of my rc files, like .vimrc etc, so I can easily set it up on new machines/accounts.
samuell/dddscript
Domain Driven Design inspired approach to python scripting
samuell/getter-and-setter-generator
Getter and Setter generator - Generates corresponding methods based on existing variable names. Variable name to be autogeneratoedmust follow the naming convention "$mVariableName" where "$m" tells the generator which variable to have a get or set-method.
samuell/galaxy-toolconfig-parser
Public repository.
samuell/galaxy-toolconfig-bnf
EBNF Grammar for generating an ANTLR parser for the Galaxy ToolConfig CLI Tool wrapper format
samuell/bioclipse.igv
Integration of the Integrative Genomics Viewer (IGV) in Bioclipse
samuell/arc_tools
Convenience tools for working with the arc SRM client (commands such as ngls, or arcls etc)
samuell/bioclipse.docpublish
Eclipse Plug-In with Ant Tasks for publishing developer documentation as Eclipse help files as well as to MediaWiki
samuell/phpsnippets.fastaformatter
A little PHP script to format FASTA Protein sequences nicely
samuell/bioclipse.smw
Semantic MediaWiki connector for Bioclipse
samuell/bioclipse.swipl
Integration of SWI-Prolog into Bioclipse
samuell/bioclipse.rdf
Bioclipse2 RDF.
samuell/bioclipse.blipkit
Integration of BLIPKIT