roryk/homebrew-cbl
Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science
Developer Profile
roryk
Discovered public repositories for roryk in the GitHub catalog.
roryk/RNASeqReadSimulator
RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.
roryk/bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
roryk/spliced-blog
data for the -spliced- blog
roryk/tiny-test-data
Super small biological datasets for unit testing
roryk/MISO
MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
roryk/normpy
Normalization methods for RNA-Seq expression data in Python.
roryk/disambiguate
Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
roryk/g-quad
Calculates the G-quadraplex score for a FASTA file of sequences
roryk/vagrant_boxes
development boxes
roryk/prelude
Prelude is an enhanced Emacs 24 configuration that should make your experience with Emacs both more pleasant and more powerful.
roryk/bcbio.rnaseq
Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway analysis for bcbio RNA-seq runs
roryk/dge-vis
Public repository.
roryk/gffutils
GFF and GTF file manipulation and interconversion
roryk/AssotesteR
R package AssotesteR
roryk/python-humbug
API bindings for Humbug
roryk/spp-idr
Wrappers around NGS peak callers to both call peaks and run IDR
roryk/python-gcon
Python API for interacting with several genomics storage solutions.
roryk/ipython-cluster-helper
Tool to easily start up an IPython cluster on different schedulers.
roryk/az_test
Public repository.
roryk/chowda
Python module for analysis of CLAMS (comprehensive lab animal monitoring system) data
roryk/xcom_nicknames
Utility to generate nicknames for X-Com Enemy Unknown
roryk/bipy
DEPRECATED Lightweight bioinformatics pipeline tools using iPython
roryk/quantum-diceware
Diceware random password generation using the ANU quantum random number server as the randomness source
roryk/bcbio.variation
Toolkit to analyze genomic variation data, built on the GATK with Clojure
roryk/PitchWeather
Links Weather Underground weather data to a PitchFx database
roryk/Quarkeon-Express
HParty 2011 hackathon project
roryk/junkdrawer
collection of small scripts or how-tos that don't fall under a separate project