robsyme/workflows-proteogenomics
Versioned, shareable and replicable workflows for proteogenomics.
Developer Profile
robsyme
Discovered public repositories for robsyme in the GitHub catalog.
robsyme/nextflow-annotate
Workflows I find helpful for fungal genome annotation
robsyme/nextflow
A DSL for data-driven computational pipelines
robsyme/docker-cortex_var
Docker container for the variant assembler cortex_var
robsyme/Comet
MS/MS search engine.
robsyme/gortex
Tool to pull out species-specific sequence from coloured graphs generated by Cortex-var
robsyme/cegma-docker
Docker container for running CEGMA
robsyme/succinctBitSet
Fast rank and select operations on indexed bitsets.
robsyme/UvaroBrowser
Learning to use web components by writing a genome annotation editor. Very, very rough at the moment.
robsyme/polymer-region-selector
A widget that selects max and min bounds on a genomic sequence of a given length.
robsyme/wavelettree
Rough sketches of wavelet trees for providing fast rank queries on non-binary alphabets.
robsyme/comparative-sketch
A very quick and dirty sketch to quickly visualise large-scale genome comparisons in non-model organisms. Also might be handy for creating SVG drafts which can be cleaned up in Inkscape for publication.
robsyme/ob-sparql
org-babel functions for SPARQL evaluation
robsyme/robsyme.com
Source for personal site
robsyme/orgslides
Very basic dart/javascript to turn existing orgmode html output into slides.
robsyme/obo
A parser for the OBO flat file format
robsyme/bioruby-chado
A library that allows you to pull ruby objects out of a Chado-schema database
robsyme/bioruby-lazyblastxml
A plugin that allows you to parse large blast XML output files lazily, reading only what you need.
robsyme/acnfp-trans-counter
A very quick and dirty project to help out a colleague
robsyme/Parastagonospora_nodorum_SN15
Storage and edit history for ACNFP gene models.
robsyme/fasta_util
An easy way of performing some common operations on fasta files
robsyme/GeneMark-Extractor
Tools for taking GeneMark output and pulling out the relevant sequences from the original fasta file.