rdpstaff/FungeneUtils
FungeneUtils package
Developer Profile
rdpstaff
Discovered public repositories for rdpstaff in the GitHub catalog.
rdpstaff/fungene_pipeline
Scripts and resources for analyzing sequence data for select eco-functional genes
rdpstaff/RDPTools
Collection of commonly used RDP Tools for easy building
rdpstaff/SequenceMatch
K-mer based sequence matching tool
rdpstaff/TaxonomyTree
TaxonomyTree building and traversal utility classes.
rdpstaff/AbundanceStats
Java code for various ecological abundance statistics
rdpstaff/SeqFilters
Java filtering framework for sequence data
rdpstaff/ProbeMatch
Tools for finding (and removing) DNA/RNA primers in sequence reads.
rdpstaff/classifier
RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
rdpstaff/Clustering
RDP memory-constrained hierarchical clustering tools.
rdpstaff/SOAP-examples
Code samples from various languages for interacting with RDP soap services
rdpstaff/Framebot
Dynamic programming based frame shift detection and correction tool with nearest neighbor classification.
rdpstaff/ReadSeq
Java based common sequence file format reader and sequence file manipulation. Most RDP projects require this package.
rdpstaff/KmerFilter
Tools for kmer analysis.
rdpstaff/AlignmentTools
Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models). Many RDP Projects require this package.
rdpstaff/Xander-HMMgs
Public repository.
rdpstaff/gfclassify
Gene Family Classifier allows for fast and accurate classification of amplicon (or open reading frame) nucleotide sequences.