radaniba/bioruby-ngs
This plugins is intended to wrap the common software used for Next Generation Sequencing data
Developer Profile
radaniba
Discovered public repositories for radaniba in the GitHub catalog.
radaniba/gridmap
Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).
radaniba/GATK-Script
Public repository.
radaniba/gridtk
SGE wrappers to submit grid jobs at Idiap
radaniba/cgat
CGAT - Computational Genomics Analysis Tools
radaniba/sickle
Windowed Adaptive Trimming for fastq files using quality
radaniba/sabre
Public repository.
radaniba/Zhang-Patena-2014
Code used for the paper "High-throughput genotyping of green algal mutants reveals random distribution of mutagenic insertion sites and endonucleolytic cleavage of transforming DNA" by Zhang, Patena et al. (The Plant Cell, 2014).
radaniba/basic-bioinf-utilities
Basic bioinformatics utilities by Weronika - useful standalone, and needed for many other packages.
radaniba/readfq
Fast multi-line FASTA/Q reader in several programming languages
radaniba/scikit-bio
Core objects, functions and statistics for working with biological data in Python.
radaniba/cutadapt
cutadapt removes adapter sequences from DNA sequencing reads
radaniba/demultadapt
demultadapt - demultiplex fastq file
radaniba/dual_barcode_demultiplex
Python script to demultiplex dual-barcode fastq files
radaniba/screed
a simple read-only sequence database, designed for short reads
radaniba/scilifelab
Misc code snippets for Science For Life Laboratory
radaniba/bioinformatics-tools
Awk, bash, python scripts for processing NGS data
radaniba/seq_crumbs
Little sequence file utilities meant to work within Unix pipelines
radaniba/SimpleSnakemakeTutorial
Public repository.
radaniba/ngs-analysis
Fork of https://code.google.com/p/ngs-analysis
radaniba/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
radaniba/ruffus
A fork of the "ruffus" pipeline program
radaniba/Docker-Terminal
A terminal for Docker containers in js!
radaniba/paper-reviews
Summaries of bioinformatics manuscripts associated with transcription regulation.
radaniba/rna-seq-scripts
All the ISB-generated scripts for the RNA-Seq project
radaniba/bcbb
Incubator for useful bioinformatics code, primarily in Python and R
radaniba/samtools
Public repository.
radaniba/markdown-editor
Live (Github-flavored) Markdown Editor
radaniba/bioinformatics-scripts
Miscellaneous bioinformatics scripts
radaniba/bioinformatics
Public repository.