princelab/lipid_classifier
Lipid classification tool
Developer Profile
princelab
Discovered public repositories for princelab in the GitHub catalog.
princelab/peak_id_mapper
A pepxml and mzml feature mapping and extraction utility
princelab/MetFrag
Match Predicted Fragments with Mass Spectra
princelab/diadem
Dynamic Isotope calculations
princelab/xcalibur-sld
Reads Thermo SLD (sequence) files that contain the information about the sequence of mass spectrometry runs.
princelab/pchip
Piecewise Cubic Hermite spline interpolation methods for ruby
princelab/msplinter
fragments molecules
princelab/KDER
A KDE implementation in ruby
princelab/peptide_to_annotation
Public repository.
princelab/scripts
various scripts used by the princelab for data processing
princelab/mspire-mascot-submit
Automates submission of searches to a mascot server
princelab/mspire-mascot-dat
mascot dat file parser for the mspire library
princelab/dblinker
Code which generates allowable crosslinks from PDB files and can write those into PyMol.
princelab/xlink_PMF
Parent Mass Fingerprint search tool for Xlink data.
princelab/mascot-dat
A parser for Mascot DAT files
princelab/distribution
Statistical Distributions multi library wrapper. Uses Ruby by default and C (statistics2/GSL) or Java extensions where available.
princelab/MS-isotoped
Code to find and identify isotopically labeled crosslinkers in Mass Spectrometry data.
princelab/double_disulfide_searcher
Public repository.
princelab/savgol
Implements Savitzky-Golay filters in ruby (and eventually in NMatrix)
princelab/rubabel
Ruby interface to the OpenBabel ruby bindings similar to pybel
princelab/scheduler
Simple scheduler for the lab mass spec
princelab/Ruby-KDE
Code required for ruby implementation of KDE and some stats (t-tests)
princelab/mspire-lipid
for working with mass spectrometry lipidomics data (right now shotgun style data)
princelab/ms-quant-validator-misc
For validating various ms quantitation engines (fairly custom)
princelab/mspire-simulator
Options Builder
princelab/ms-testdata
Stores larger data files for commonly used file formats
princelab/Rserve-Ruby-client
Pure Ruby client for Rserve. Based on 'new' Java client provided with server, but with modifications to adhere to POLS
princelab/spectral_summing
Public repository.
princelab/protein_tag_annotater
This produces an annotated markdown file for visualizing the changes caused by tagging agent.
princelab/gene_ontology
simple class for working with GO (gene ontology); also see Bio::GO classes in bioruby
princelab/isoelectric_calc
Calculates pI values for given protein sequences
princelab/mzml
Non-validating mzML parser/reader
princelab/metriculator
Performance metric tool for LCMS and MS experiments.
princelab/ms-quant
quantitation for mass spectrometry proteomics experiments. This project is not associated with MSQuant(http://msquant.sourceforge.net/), even though the goals are similar.
princelab/ms-qspecprep
This is a package that can prep files completely for a statistical comparison by the QSpec package
princelab/GuiMsConverter
This is a Ruby/Shoes based GUI for enabling those who dislike CLI programs to easily convert their RAW files to formats conducive to downstream processing.
princelab/massifquant
Kalman tracker for binless quantification of chromatographic features in mass spectrometry proteomics
princelab/ms-archiver
A package to archive and analyze MS data over both Windows and Linux machines and archive all the files to both a database and a network location.
princelab/ms-ident
mspire library for dealing with identifications from mass spectrometry
princelab/mspire-centroider
centroid profile spectra
princelab/ms-msconvert
Servers and wrappers offering a convenient interface to the ProteomeWizard (pwiz) msconvert utility
princelab/katamari
mass spectrometry proteomics analysis pipeline based on KatamariDotei
princelab/constants
Libraries of physical and chemical constants
princelab/narray
Ruby/NArray : N-dimensional Numerical Array for Ruby
princelab/bioruby
bioruby
princelab/pocketbook
Mass Spec Proteomics database and search engine.
princelab/specdive
Data viewing interface for KatamariDotei in Rails
princelab/KatamariDotei
An MS proteomic analysis pipeline developed under Prince Labs (Still in development)
princelab/mspire-sequest
An mspire library for working with SEQUEST related data (.srf files, .sqt files, etc).
princelab/mspire
mass spectrometry proteomics in ruby