peterjc/biopython_workshop
A basic introduction to Biopython, intended for a classroom based workshop. Now on Codeberg.
Developer Profile
peterjc
Discovered public repositories for peterjc in the GitHub catalog.
peterjc/abyss
de novo sequence assembler
peterjc/pico_galaxy
Galaxy tools and wrappers for sequence analysis
peterjc/bgruening_galaxytools
Björn Grüning's Galaxy Tool wrappers (forked for my contributions)
peterjc/FALDO-paper
Public repository.
peterjc/galaxy_blast
Galaxy wrappers for NCBI BLAST+ and related BLAST tools.
peterjc/FALDO
Feature Annotation Location Description Ontology
peterjc/numpy
Numpy main repository
peterjc/nose
nose is nicer testing for python
peterjc/backports.lzma
Backport of Python 3.3's standard library module lzma for LZMA/XY compressed files
peterjc/dablooms
scaling, counting, bloom filter library
peterjc/bioperl-live
Core BioPerl 1.x code
peterjc/hts-specs
This is my clone of the new official SAM/BAM specification github repository, to be used for proposed patches etc.
peterjc/samtools
This is my clone of the new official samtools github repository, to be used for proposed patches etc.
peterjc/longsight
Python code for capturing images from a webcam etc. Migrated to Codeberg.
peterjc/vbench
vbench: A tool for benchmarking your code through time, for showing performance improvement or regressions
peterjc/bioruby
bioruby
peterjc/tarball2git
Simple Python script to take a set of versioned tar balls and import them into a git repository. Now on Codeberg
peterjc/split-dist
Unofficial repository for Thomas Mailund's tool Split-Dist (sdist)
peterjc/samtools-old
This is *NOT* the official repository of samtools.
peterjc/picobio
Miscellaneous Bioinformatics scripts etc mostly in Python
peterjc/bcbb
Useful bioinformatics code, primarily in Python and R
peterjc/ccn
Coupled Cell Networks
peterjc/maf2sam
Convert MIRA Assembly Format (MAF) to Sequence Alignment/Map (SAM) format. Also archieved on Codeberg.
peterjc/forked-daapd
A re-write of the firefly media server (mt-daapd). It's released under GPLv2+. Please note that this git repository is a mirror of the official one at git://git.debian.org/~jblache/forked-daapd.git
peterjc/screed
a short read database
peterjc/biopython
My fork of the official Biopython repository, used for experimental branches etc